Difference between revisions of "Simulations of Particle Interactions with Matter"

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== Overview ==
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==Class Admin==
  
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=== Particle Detection ===
 
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A device detects a particle only after the particle transfers energy to the device.
 
  
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Energy intrinsic to a device depends on the material used in a device
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[[TF_SPIM_ClassAdmin]]
  
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Some device of material with an average atomic number (<math>Z</math>) is at some temperature (<math>T</math>).  The materials atoms are in constant thermal motion (unless T = zero degrees Klevin).
+
== Homework Problems==
 +
[[HomeWork_Simulations_of_Particle_Interactions_with_Matter]]
  
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Statistical Thermodynamics tells us that the canonical energy distribution of the atoms is given by the Maxwell-Boltzmann statistics such that
+
=Introduction=
  
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<math>P(E) = \frac{1}{kT} e^{-\frac{E}{kT}}</math>
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[[TF_SPIM_Intro]]
  
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<math>P(E)</math> represents the probability of any atom in the system having an energy <math>E</math> where
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= Energy Loss =
  
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<math>k= 1.38 \times 10^{-23} \frac{J}{mole \cdot K}</math>
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[[TF_SPIM_StoppingPower]]
  
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Note:  You may be more familiar with the Maxwell-Boltzmann distribution in the form
+
Ann. Phys. vol. 5, 325, (1930)
−
 
 
−
<math>N(\nu) = 4 \pi N \left ( \frac{m}{2\pi k T} \right ) ^{3/2} v^2  e^{-mv^2/2kT}</math>
 
−
 
 
−
where <math>N(v) \Delta v</math> would represent the molesules in the gas sample with speeds between <math>v</math> and <math>v + \Delta v</math>
 
−
 
 
−
==== Example 1: P(E=5 eV) ====
 
  
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;What is the probability that an atom in a 12.011 gram block of carbon would have and energy of 5 eV?
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=Interactions of Electrons and Photons with Matter=
  
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First lets check that the probability distribution is Normailized; ie: does <math>\int_0^{\infty} P(E) dE =1</math>?
+
[[TF_SPIM_e-gamma]]
  
 +
= Hadronic Interactions =
  
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<math>\int_0^{\infty} P(E) dE = \int_0^{\infty} \frac{1}{kT} e^{-\frac{E}{kT}} dE = \frac{1}{kT} \frac{1}{\frac{1}{-kT}} e^{-\frac{E}{kT}} \mid_0^{\infty} = - [e^{-\infty} - e^0]= 1</math>
+
[[TF_SPIM_HadronicInteractions]]
  
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<math>P(E=5eV)</math> is calculated by integrating P(E) over some energy interval ( ie:<math> N(v) dv</math>).  I will arbitrarily choose 4.9 eV to 5.1 eV as a starting point.
+
= Final Project=
  
 +
A final project will be submitted that will be graded with the following metrics:
  
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<math>\int_{4.9 eV}^{5.1 eV} P(E) dE =  - [e^{-5.1 eV/kT} - e^{4.9 eV/kT}]</math>
+
1.) The document must be less than 15 pages.
  
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<math>k= (1.38 \times 10^{-23} \frac{J}{mole \cdot K} ) =  (1.38 \times 10^{-23} \frac{J}{mole \cdot K} )(6.42 \times 10^{18} \frac{eV}{J})= 8.614 \times 10^{-5} \frac {eV}{mole \cdot K}</math>
+
2.) The document must contain references in a bibliography (5 points) .
  
−
assuming a room empterature of <math>T=300 K</math>
+
3.) A comparison must be made between GEANT4's prediction and either the prediction of someone else or an experimental result(30 points).
  
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then<math>kT = 0.0258 \frac{eV}{mole}</math>
+
4.) The graphs must be of publication quality with font sizes similar or larger than the 12 point font (10 points).
  
−
and
+
5.) The document must be grammatically correct (5 points).
  
−
<math>\int_{4.9 eV}^{5.1 eV} P(E) dE =  - [e^{-5.1/0.0258} - e^{4.9/0.0258}] = 4.48 \times 10^{-83} - 1.9 \times 10^{-86} \approx 4.48 \times 10^{-83}</math>
+
6.) The document format must contain the following sections: An abstract of 5 sentences (5 points) , an Introduction(10 points), a Theory section (20 points) , if applicable a section describing the experiment that was simulated, a section delineating the comparisons that were made, and a conclusion( 15 points).
  
−
or in other words the precise mathematical calculation of the probability may be approximated by just using the distribution function alone
+
=Resources=
  
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<math>P(E=5eV) = e^{-5/0.0258} \approx 10^{-85}</math>
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[http://geant4.web.cern.ch/geant4/ GEANT4 Home Page]
  
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This approximation breaks down as <math>E \rightarrow 0.0258 eV</math>
+
[http://root.cern.ch ROOT Home page]
  
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Since we have 12.011 grams of carbon and 1 mole of carbon = 12.011 g = <math>6 \times 10^{23} </math>carbon atoms
+
[http://conferences.fnal.gov/g4tutorial/g4cd/Documentation/WorkshopExercises/ Fermi Lab Example]
  
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We do not expect to see a 5 eV carbon atom in a sample size of <math>6 \times 10^{23} </math> carbon atoms when the probability of observing such an atom is <math>\approx 10^{-85}</math>
 
  
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The energy we expect to see would be calculated by
+
[http://physics.nist.gov/PhysRefData/Star/Text/ESTAR.html NIST Range Tables]
  
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<math><E> = \int_{0}^{\infty} E \cdot P(E) dE</math>
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[http://ie.lbl.gov/xray/  X-ray specturm]
  
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If you used this block of carbon as a detector you would easily notice an event in which a carbon atom absorbed 5 eV of energy as compared to the energy of a typical atom in the carbon block.
+
[[Installing_GEANT4.9.3_Fsim]]
  
−
----
+
== Saving/restoring Random number seed==
  
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;Silicon detectors and Ionization chambers are two commonly used devices for detecting radiation.
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You save the current state of the random number generator with the command
  
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approximately 1 eV of energy is all that you need to create an electron-ion pair in Silicon
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/random/setSavingFlag 1
  
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<math>P(E=1 eV) = e^{-1/0.0258} \approx 10^{-17}</math>
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/run/beamOn 100
  
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approximately 10 eV of energy is needed to ionize an atom in a gas chamber
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/random/saveThisRun
  
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<math>P(E=10 eV) = e^{-10/0.0258} \approx 10^{-169}</math>
+
A file is created called
  
 +
currentEvent.rndm
  
 +
/control/shell mv currentEvent.rndm currentEvent10.rndm
  
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The low probability of having an atom with 10 eV of energy means that an ionization chamber would have a better Signal to Noise ratio (SNR) for detecting 10 eV radiation than a silicon detector
 
  
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But if you cool the silicon detector to 200 degrees Kelvin (200 K) then
+
You can restore the random number generator and begin generating random number from the last save time
  
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<math>P(E=1 eV) = e^{-1/0.0172} \approx 10^{-26} << 10^{-17}</math>
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/random/resetEngineFrom currentEvent.rndm
  
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So cooling your detector will slow the atoms down making it more noticable when one of the atoms absorbs energy.
+
==Building GEANT4.11==
  
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also, if the radiation flux is large, more electron-hole pairs are created and you get a more noticeable signal.
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===4.11.2===
 +
[[TF_GEANT4.11]]
  
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Unfortunately, with some detectore, like silicon, you can cause radiation damage that diminishes it's quantum efficiency for absorbing energy.
+
==Building GEANT4.10==
−
 
 
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=== The Monte Carlo method ===
 
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; Stochastic
 
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: from the greek word "stachos"
 
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: a means of, relating to, or characterized by conjecture and randomness.
 
−
 
 
−
 
 
−
A stochastic process is one whose behavior is non-deterministic in that the next state of the process is partially determined.
 
−
 
 
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Physics has many such non-deterministic systems:
 
−
 
 
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*Quantum Mechanics
 
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*Thermodynamics
 
−
 
 
−
 
 
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Basically the monte-carlo method uses a random number generator (RNG) to generate a distribution (gaussian, uniform, Poission,...) which is used to solve a stochastic process based on an astochastic description.
 
−
 
 
−
 
 
−
==== Example 2 Calculation of <math>\pi</math>====
 
−
 
 
−
;Astochastic description:
 
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: <math>\pi</math> may be measured as the ratio of the area of a circle of radius <math>r</math> divided by the area of a square of length <math>2r</math>
 
−
 
 
−
[[Image:PI_from_AreaRatio.jpg]]<math>\frac{A_{circle}}{A_{square}} = \frac{\pi r^2}{4r^2} = \frac{\pi}{4}</math>
 
−
 
 
−
You can measure the value of <math>\pi</math> if you physically measure the above ratios.
 
−
 
 
−
; Stochastic description:
 
−
: Construct a dart board representing the above geometry, throw several darts at it, and look at a ratio of the number of darts in the circle to the total number of darts thrown (assuming you always hit the dart board).
 
−
 
 
−
; Monte-Carlo Method
 
−
:Here is an outline of a program to calulate <math>\pi</math> using the Monte-Carlo method with the above Stochastic description
 
−
[[Image:MC_PI_fromAreaRatio.jpg]]
 
−
begin loop
 
−
  x=rnd
 
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  y=rnd
 
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  dist=sqrt(x*x+y*y)
 
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  if dist <= 1.0 then numbCircHits+=1.0
 
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  numbSquareHist += 1.0
 
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end loop
 
−
  print PI = 4*numbCircHits/numbSquareHits
 
−
 
 
−
=== A Unix Primer ===
 
−
To get our feet wet using the UNIX operating system, we will try to solve example 2 above using a RNG under UNIX
 
−
 
 
−
==== List of important Commands====
 
−
 
 
−
# ls
 
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# pwd
 
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# cd
 
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# df
 
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# ssh
 
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# scp
 
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# mkdir
 
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# printenv
 
−
# emacs, vi, vim
 
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# make, gcc
 
−
# man
 
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# less
 
−
# rm
 
−
 
 
−
----
 
−
Most of the commands executed within a shell under UNIX have command line arguments (switches) which tell the command to print information about using the command to the screen.  The common forms of these switches are "-h", "--h", or "--help"
 
−
 
 
−
ls --help
 
−
ssh -h
 
−
 
 
−
'' the switch deponds on your flavor of UNIX''
 
−
 
 
−
if using the switch doesn;t help you can try the "man" (sort for manual) pages (if they were installed). 
 
−
Try
 
−
man -k pwd
 
−
 
 
−
the above command will search the manual for the key word "pwd"
 
−
 
 
−
==== Example 3: using UNIX ====
 
−
 
 
−
Step
 
−
# login to inca.<br> [http://physics.isu.edu/~tforest/Classes/NucSim/Day1/XwindowsOnWindows.html click here for a description of logging in if using windows]
 
−
# mkdir src
 
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# cd src
 
−
# cp -R ~tforest/NucSim/Day1 ./
 
−
# ls
 
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# cd Day1
 
−
# make
 
−
#./rndtest
 
−
 
 
−
[http://physics.isu.edu/~tforest/Classes/NucSim/Day1/RNG/Marsaglia/noviceExample/ Here is a web link to the source files you can copy in case the above doesn't work]
 
−
 
 
−
=== A Root Primer ===
 
−
==== Example 1: Create Ntuple  and Draw Histogram====
 
−
 
 
−
=== Cross Sections ===
 
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==== Definitions ====
 
−
;Total cross section
 
−
:<math>\sigma</math> = <math>\equiv \frac{\# particles\; scattered} {\frac{ \# incident \; particles}{Area}}</math>
 
−
 
 
−
;Differential cross section
 
−
:<math>\sigma(\theta)</math> = <math> \frac{d \sigma}{d \Omega} \equiv \frac{\frac{\# particles\; scattered}{solid \; angle}} {\frac{ \# incident \; particles}{Area}}</math>
 
−
 
 
−
; Solid Angle
 
−
:[[Image:SolidAngleDefinition.jpg]]
 
−
: <math>\Omega</math>= surface area of a sphere covered by the detector
 
−
: ie;the detectors area projected onto the surface of a sphere
 
−
:A= surface area of detector
 
−
:r=distance from interaction point to detector
 
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:<math>\Omega = \frac{A}{r^2} </math>sterradians
 
−
: <math>A_{sphere} = 4 \pi r^2</math> if your detector was a hollow ball
 
−
:<math>\Omega_{max} = \frac{4 \pi r^2}{r^2} = 4\pi</math>sterradians
 
−
 
 
−
;Units
 
−
:Cross-sections have the units of Area
 
−
:1 barn = <math>10^{-28} m^2</math>
 
−
; [units of <math>\sigma(\theta)</math>] =<math>\frac{\frac{[particles]}{[sterradian]}} {\frac{ [ particles]}{[m^2]}} = m^2</math>
 
−
 
 
−
 
 
−
[[Image:FixedTargetScatteringCrossSection.jpg]]
 
−
; Fixed target scattering
 
−
: <math>N_{in}</math>= # of particles in = <math>I \cdot A_{in}</math>
 
−
:: <math>A_{in}</math> is the area of the ring of incident particles
 
−
:<math>dN_{in} = I \cdot dA = I (2\pi b) db</math>= # particles in a ring of radius <math>b</math> and thickness <math>db</math>
 
−
 
 
−
You can measure <math>\sigma(\theta)</math> if you measure the # of particles detected <math>d N</math> in a known detector solid angle <math>d \Omega</math> from a known incident particle Flux (<math>I</math>)  as
 
−
 
 
−
<math>\sigma(\theta) = \frac{\frac{d N}{ d \Omega}}{I}</math>
 
−
 
 
−
Alternatively if you have a theory which tells you <math>\sigma(\theta)</math> which you want to test experimentally with a beam of flux <math>I</math> then you would measure counts (particles)
 
−
 
 
−
<math>dN = I \sigma(\theta) d \Omega = I \sigma(\theta)  \frac{d A}{r^2} = I \sigma(\theta) \frac{r^2 \sin(\theta) d \theta d \phi}{r^2}</math>
 
−
 
 
−
;Units
 
−
: <math>[d N] = [\frac {particles}{m^2}][m^2] [sterradian] </math> = # of particles
 
−
: or for a count rate divide both sides by time and you get beam current on the RHS
 
−
: integrate and you have the total number of counts
 
−
 
 
−
;Classical Scattering
 
−
: In classical scattering you get the same number of particle out that you put in (no capture, conversion,..)
 
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: <math>d N_{in} = dN</math>
 
−
:<math>d N_{in} = I dA = I (2\pi b) db</math>
 
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: <math>d N = I \sigma(\theta) d \Omega =  I \sigma(\theta) \sin(\theta) d \theta d \phi = I \sigma(\theta) \sin(\theta) d \theta (2 \pi )</math>
 
−
:<math>  I (2\pi b) db =  I \sigma(\theta) \sin(\theta) d \theta (2 \pi )</math>
 
−
:<math>    b  db =  \sigma(\theta) \sin(\theta) d \theta </math>
 
−
:<math>\sigma(\theta) =  \frac{b}{\sin(\theta)}\frac{db}{d \theta}</math>
 
−
:<math>\frac{db}{d \theta}</math> tells you how the impact parameter <math>b</math> changes with scattering angle <math>\theta</math>
 
−
 
 
−
==== Example 4: Elastic Scattering ====
 
−
This example is an example of classical scattering.
 
−
 
 
−
Our goal is to find <math>\sigma(\theta)</math> for an elastic collision of 2 impenetrable spheres of diameter <math>a</math>.  To solve this elastic scattering problem we will describe the collision using the Center of Mas (C.M.) coordinate system in terms of the reduced mass.  As we shall see, by using C.M. coordinate system the 2-body collision becomes a 1-body problem.  Then we will describe the motion of the reduced mass in the C.M. Frame.
 
−
 
 
−
[[Image:SPIM_ElasCollis_Lab_CM_Frame.jpg]]
 
−
 
 
−
; Variable definitions
 
−
:<math>b</math>= impact parameter ; distance of closest approach
 
−
:<math>m_1</math>= mass of incoming ball
 
−
:<math>m_2</math>= mass of target ball
 
−
:<math>u_1</math>= iniital velocity of  incoming ball in Lab Frame
 
−
:<math>v_1</math>= final velocity of  <math>m_1</math> in Lab Frame
 
−
:<math>\psi</math>= scattering angle of <math>m_1</math> in Lab frame after collision
 
−
:<math>u_1^{\prime}</math>= iniital velocity of  <math>m_1</math> in C.M.  Frame
 
−
:<math>v_1^{\prime}</math>= final velocity of  <math>m_1</math> in C.M. Frame
 
−
:<math>u_2^{\prime}</math>= iniital velocity of  <math>m_2</math> in C.M.  Frame
 
−
:<math>v_2^{\prime}</math>= final velocity of  <math>m_2</math> in C.M. Frame
 
−
:<math>\theta</math>= scattering angle of <math>m_1</math> in C.M. frame after collision
 
−
 
 
−
 
 
−
;Determining the reduced mass:
 
−
 
 
−
 
 
−
[[Image:SPIM_2Body-1BodyCoordSystem.jpg]]
 
−
 
 
−
; vector definitions
 
−
:<math>\vec{r}_1</math> = a position vector pointing to the location of <math>m_1</math>
 
−
:<math>\vec{r}_2</math> = a position vector pointing to the location of <math>m_2</math>
 
−
:<math>\vec{R}</math> = a position vector pointing to the center of mass of the two ball system
 
−
:<math>\vec{r} \equiv \vec{r}_1 - \vec{r}_2</math> = the magnitude of this vector is the distance between the two masses
 
−
 
 
−
In the C.M. reference frame the above vectors have the following relationships
 
−
 
 
−
# <math>\vec{R} = 0 = \frac{m_1 \vec{r}_1 + m_2 \vec{r}_2}{m_1 + m_2} \Rightarrow m_2 \vec{r}_1 = -m_2 \vec{r}_2</math>
 
−
# <math>\vec{r}_1 - \vec{r}_2 = \vec{r}</math>
 
−
 
 
−
solving the above equations for <math>\vec{r_1}</math> and <math>\vec{r_2}</math> and defining the reduced mass <math>\mu</math> as
 
−
 
 
−
:<math>\mu = \frac{m_1 \cdot m_2}{m_1 + m_2} \equiv</math> reduced mass
 
−
 
 
−
leads to
 
−
 
 
−
: <math>\vec{r}_1 = \frac{\mu}{m_1} \vec{r}</math>
 
−
: <math>\vec{r}_2 = \frac{\mu}{m_2} \vec{r}</math>
 
−
 
 
−
We can use the above reduced mass relationships to construct the Lagrangian in terms of <math>\vec{r}</math> instead of <math>\vec{r}_1</math> and <math> \vec{r}_2</math> thereby reducing the problem from a 2-body problem to a 1-body problem.
 
−
 
 
−
; Construct the Lagrangian
 
−
 
 
−
The Lagrangian is defined as:
 
−
 
 
−
 
 
−
<math>\mathcal{L} = T - U</math>
 
−
 
 
−
where
 
−
 
 
−
<math>T \equiv</math> kinetic energy of the system
 
−
 
 
−
<math>U \equiv</math> Potential energy of the system which describes the interaction
 
−
 
 
−
 
 
−
<math>\mathcal{L} = \frac{1}{2} |\vec{\dot{r}}_1|^2 + \frac{1}{2} |\vec{\dot{r}}_2|^2 - U</math>
 
−
:= <math>\frac{1}{2} m_1 \left (\frac{m_2}{m1+m_2} \right )^2  |\vec{\dot{r}}|^2 + \frac{1}{2} m_2 \left (\frac{m_1}{m1+m_2} \right )^2  |\vec{\dot{r}}|^2 -U(\vec{r})</math>
 
−
 
 
−
after substituting derivative of the expressions for <math>\vec{r_1}</math> and <math>\vec{r}_2</math>
 
−
 
 
−
: = <math>\frac{1}{2} \mu |\vec{\dot{r}}|^2 -U(\vec{r})</math>  The 2-body problem is now described by a 1-body Lagrangian
 
−
 
 
−
Lagranges equations of motion are given by
 
−
: <math>\frac{\partial \mathcal{L}}{\partial q} = \frac{d}{dt} \frac{\partial \mathcal{L}}{\dot{q}}</math>
 
−
where <math>q</math> represents on of the coordinate (cannonical variables).
 
−
 
 
−
To get the classical scattering cross section we are interested in finding an expression for the dependence of the impact parameter on the scattering angle,<math>\frac{d b}{d \theta}</math>. 
 
−
 
 
−
Now lets redraw the collision in terms of a reference frame fixed on <math>m_2</math> (before collision its the Lab Frame but not after collision).
 
−
 
 
−
[[Image:SPIM_ElasCollis_CMFrame.jpg]] [[Media:SPIM_ElasColls_CMFrame_xfig.txt]]
 
−
 
 
−
The C.M. Frame rides along the center of mass, the above coordinate system though has its origin on <math>m_2</math> and only overlaps in space with the CM frame at the collision point sufficiently to illustrate <math>\theta</math>.  If <math>b > a</math> then there is no collision (<math>\theta=0</math>),  otherwise a collision happens when r=a (the distance between the balls is equal to their diameter).  A head on collision is defined as <math>b=0</math> (<math>\theta=\pi</math>).
 
−
 
 
−
;Observation
 
−
: as <math>\theta</math> gets smaller, <math>b</math> gets bigger
 
−
: <math>\frac{d b}{d \theta} < 0</math>
 
−
 
 
−
Using plane polar coordinates (<math>r, \phi</math>) we can describe the problem in the lab frame as:
 
−
 
 
−
<math>\vec{v} = \dot{R} \hat{e}_r + r \dot{\phi} \hat{e}_{\phi}</math>
 
−
 
 
−
<math>T = \frac{1}{2} \mu ( \dot{r)}^2 + r^2 \dot{\phi}^2)</math>
 
−
 
 
−
 
 
−
<math>U(r) = \left \{  {0 \; r > a \atop \infty \; r \le a} \right .</math>
 
−
 
 
−
<math>\mathcal{L} = T -U = \frac{1}{2} \mu ( \dot{r}^2 + r^2 \dot{\phi}^2) - U(r)</math>
 
−
 
 
−
Lagranges Equation of Motion:
 
−
 
 
−
<math>\frac{\partial \mathcal {L}}{\partial \phi} = \frac{d}{d t} \frac{\partial \mathcal{L}}{\partial \dot{\phi}}</math>
 
−
<math>0 = \frac{d}{d t} [ \mu r^2 \dot{\phi}] \Rightarrow</math>  there is a constant of motion ( Constant angular momentum)
 
−
 
 
−
<math>\ell \equiv \mu r^2 \dot{\phi} = \vec{r} \times \vec{p} = \vec{r} \times \mu \vec{v} = r^2 \mu \dot{\phi}</math>
 
−
 
 
−
substitute <math>\ell</math> into <math>\mathcal{L}</math>
 
−
 
 
−
<math>\mathcal{L} = \frac{1}{2} ( \mu  \dot{r}^2 + \frac{\ell}{\mu r^2} ) - U(r)</math>
 
−
 
 
−
The two equations above are in terms of <math>r</math> and <math>\phi</math> whereas our goal is to find an expression for <math>\frac{ d b}{ d \theta}</math>.  Since <math>r</math> is related to <math>b</math> and <math>\phi</math> is related to<math> \theta</math> (<math>\theta = \pi - 2\phi</math>; see figure above) we should try and find expressions for <math>d \phi</math> in terms of <math>r(b)</math>
 
−
 
 
−
;Trick
 
−
: <math>\dot{\phi} = \frac{d \phi}{d t} = \frac{d \phi}{d r} \frac{d r}{d t}</math>
 
−
:<math>\Rightarrow \ell = \mu r^2 \frac{d \phi}{d r} \dot{r}</math>
 
−
:or
 
−
: <math>d \phi = \frac{\ell}{\mu r^2 \dot{r}} dr</math>
 
−
 
 
−
We now need an expression for <math>\dot{r}</math> in order to integrate the above equation to determine the functional dependence of <math>\phi</math> and hence<math> \theta</math>.
 
−
 
 
−
Since Energy is conserved (Elastic Scattering), we may define the Hamiltonian as
 
−
 
 
−
<math>H = T + U = \frac{1}{2} (mu \dot{r}^2 + \frac{\ell}{\mu r^2}) + U(r) = constant \equiv E</math>
 
−
 
 
−
solving for <math>\dot{r}</math>
 
−
 
 
−
<math>\dot{r} = \pm \sqrt{\frac{2(E-U(r))}{\mu} - \frac{\ell^2}{\mu^2 r^2}}</math>
 
−
 
 
−
substituting the above into the equation for <math>d \phi</math> and integrating:
 
−
 
 
−
<math>\phi = \int d \phi = \int_{r_{min}}^{r_{max}} \frac{\ell}{\mu r^2 \dot{R}} dr</math>
 
−
 
 
−
<math>r_{min} = a  \; \; \;  r_{max}= \infty  \; \; \;  U(r) = 0 : a \le r \le \infty</math>
 
−
 
 
−
<math>\phi = \int_a^{\infty} \frac{\ell} {r^2 \sqrt{2 \mu E - \frac{\ell^2}{r^2}} }dr</math>
 
−
 
 
−
For <math>a \le r \le \infty</math> : <math>E = \frac{1}{2} \mu v^2_{cm} \Rightarrow v_{cm} = \sqrt{\frac{2E}{\mu}}</math>
 
−
 
 
−
<math>\vec{\ell} = \vec{r} \times \vec{p} \Rightarrow |\vec{\ell}| = |\vec{r}| |\vec{p}| \sin(\phi) = r \mu v_{cm} \sin(\phi) = r \mu \left ( \sqrt{\frac{2E}{\mu}} \right) \sin(\phi) = \sqrt{2 \mu E} r\sin(\phi) =\sqrt{2 \mu E} b</math>
 
−
 
 
−
substituting this expression for <math>\ell</math> into the last expression for <math>\phi</math> above :
 
−
 
 
−
<math>\phi =\int_a^{\infty}  \frac{b dr}{r\sqrt{(r^2-b^2)}}</math>
 
−
 
 
−
;Integral Table
 
−
: <math>\int  \frac{dx}{x\sqrt{(\alpha x^2+\beta x+\gamma)}} = \frac{-1}{\sqrt{-\gamma}} \sin^{-1} \left (\frac{\beta x+2\gamma}{|x|\sqrt{\beta^2-4\alpha \gamma}} \right )</math>
 
−
 
 
−
let <math>x=r \;\; \alpha=1 \;\; \beta=0 \;\; \gamma=-b^2</math>
 
−
 
 
−
then
 
−
 
 
−
<math>\phi = \left . b \frac{1}{\sqrt{-(-b^2)}} \sin^{-1} \left (\frac{-2b^2}{r\sqrt{0-4(1)(-b^2) } }\right ) \right |_a^{\infty} = \sin^{-1} (0)- \sin^{-1}(-\frac{b}{a})</math>
 
−
 
 
−
or
 
−
 
 
−
<math>\sin(\phi) = \frac{b}{a} = \sin \left ( \frac{\pi}{2} - \frac{\theta}{2} \right ) = \cos \left ( \frac{\theta}{2} \right )</math>
 
−
 
 
−
:<math>\Rightarrow b = a \cos \left( \frac{\theta}{2} \right)</math>
 
−
 
 
−
 
 
−
; Now substitue the above into the expression for <math>\sigma(\theta)</math>
 
−
 
 
−
<math>\sigma(\theta) = \frac{b}{\sin(\theta)} \frac{d b}{d \theta} = \frac{a \cos(\theta/2)}{sin(\theta)} a[-\sin(\theta/2)]\frac{1}{2}
 
−
= \frac{a^2}{2} \frac{\cos(\theta/2) \sin(\theta/2)}{\sin(\theta)}</math>
 
−
 
 
−
drop the negative sign, sqrt in denominator allows this, and use the trig identity
 
−
 
 
−
:<math>\sin \left (\frac{\theta}{2} + \frac{\theta}{2} \right ) = \cos \left (\frac{\theta}{2} \right) \sin \left (\frac{\theta}{2} \right ) + \cos \left ( \frac{\theta}{2} \right ) \sin \left (\frac{\theta}{2} \right )</math>
 
−
:<math>\sin(\theta) = 2 \cos \left (\frac{\theta}{2} \right ) \sin \left (\frac{\theta}{2} \right )</math>
 
−
 
 
−
<math>\sigma(\theta) = \frac{a^2}{2} \frac{1}{2} = \frac{a^2}{4}</math>
 
−
 
 
−
<math>\sigma = \int \sigma(\theta) d \Omega = \frac{a^2}{2} \frac{1}{2} 4 \pi  = \pi a^2</math>
 
−
 
 
−
 
 
−
;compare with result from definition
 
−
 
 
−
:<math>\sigma</math> = scattering cross-section <math>\equiv \frac{\# particles\; scattered} {\frac{ \# incident \; particles}{Area}}</math>
 
−
:number of particles scattered = number of incident particles
 
−
: Area = <math> \pi a^2</math> = The area profile in which a collision occurs[[Image:ClassicalEffectiveScatteringArea.jpg | 200 px]]
 
−
 
 
−
<math>\sigma = \frac{{N}}{\frac{ N}{\pi a^2}} = \pi a^2</math>
 
−
 
 
−
==== Lab Frame Cross Sections ====
 
−
 
 
−
The C.M. frame is often chosen to theoretically calculate cross-sections even though experiments are conducted in the Lab frame.  In such cases you will need to transform cross-sections between two frames.
 
−
 
 
−
The total cross-section should be frame independent
 
−
 
 
−
:<math>\sigma_{C.M.} = \sigma_{Lab}</math>
 
−
 
 
−
or
 
−
 
 
−
: <math>\sigma(\theta) d \Omega = \sigma(\psi) d \Omega^{\prime}</math>
 
−
 
 
−
where
 
−
 
 
−
<math>\theta</math> is in the CM frame and <math>\psi</math> is in the Lab frame.
 
−
 
 
−
 
 
−
;A non-relativistic transformation:
 
−
 
 
−
: <math>\sigma(\theta) d \Omega = \sigma(\psi) d \Omega^{\prime}</math>
 
−
: <math>\sigma(\theta) 2 \pi \sin(\theta) d \theta = \sigma(\psi) 2 \pi \sin (\psi) d \psi</math>
 
−
: <math>\Rightarrow \sigma(\psi) = \frac{\sin(\theta)}{\sin(\psi)} \frac{d \theta}{d \psi} \sigma(\theta)</math>
 
−
 
 
−
The transformation is governed by the dependence of <math>\theta</math> on <math> \psi</math> <math> \left( \frac{d \theta}{d \psi} \right )</math>
 
−
 
 
−
Lets return back to our picture of the scattering Process
 
−
 
 
−
[[Image:SPIM ElasCollis Lab CM Frame.jpg]]
 
−
 
 
−
if we superimpose the vectors <math>\vec{v}_1</math> and <math>\vec{v}_1^{\prime}</math> we have
 
−
 
 
−
[[Image:SPIM ElasCollis Lab CM Frame_Velocities.jpg]]
 
−
 
 
−
Trig identities (non-relativistic Gallilean transformation) tell us
 
−
 
 
−
<math>v_1 \sin(\psi) = v_1^{\prime} \sin(\theta)</math>
 
−
 
 
−
 
 
−
<math>v_1 cos(\psi) = v_{cm} + v_1^{\prime} \cos(\theta)</math>
 
−
 
 
−
solving for <math>\psi</math>
 
−
 
 
−
<math>\tan(\psi) = \frac{\sin(\psi)}{\cos(\psi)} = \frac{v_1^{\prime} \sin(\theta)/v_1}{\frac{v_{CM}}{v_1} + \frac{v_1^{\prime} \cos(\theta)}{v_1} }
 
−
= \frac{\sin(\theta)}{\cos(\theta) + \frac{v_{CM}}{v_1^{\prime}}}</math>
 
−
 
 
−
For an elastic collision only the directions change in the CM Frame: <math>u_1^{\prime}= v_1^{\prime}</math>  & <math>u_1^{\prime}= v_2^{\prime}</math>
 
−
 
 
−
;From the definition of the C.M.
 
−
;<math>\vec{v}_{CM} = \frac{m_1 \vec{u}_1 + m_2 \vec{u}_2}{m_1+m_2} = \frac{m_1}{m_1+m_2} \vec{u}_1</math>
 
−
 
 
−
;conservation of momentum in CM Frame <math>\Rightarrow</math> :
 
−
:<math>m_1 u_1^{\prime} = - m_2 u_2{\prime}</math>
 
−
 
 
−
:<math> \Rightarrow v_1^{\prime} = u_1^{\prime} = \frac{-m_2}{m_1} u_2^{\prime}</math>
 
−
 
 
−
; Gallilean Coordinate transformation:
 
−
;<math>\vec{u}_1 = \vec{u}_1^{\prime} + \vec{v}_{CM} = \vec{u}_1^{\prime} + \frac{m_1}{m_1+m_2} \vec{u}_1</math>
 
−
:<math>\Rightarrow u_1{\prime} = \left [ 1 - \frac{m_1}{m_1 + m_2} \right ] u_1 = \frac{m_2}{m_1+m_2}u_1</math>
 
−
:<math>\Rightarrow v_1^{\prime} = u_1^{\prime}  =\frac{m_2}{m_1+m_2} u_1</math>
 
−
 
 
−
; another experission for <math>\psi</math>
 
−
 
 
−
using the above gallilean transformation we can do the following
 
−
 
 
−
:<math>\frac{v_{CM}}{v_1^{\prime}}= \frac{\frac{m_1}{m_1+m_2} u_1}{\frac{m_2}{m_1+m_2} u_1} = \frac{m_1}{m_2}</math>
 
−
 
 
−
or
 
−
 
 
−
: <math>\tan(\psi) = \frac{\sin(\theta)}{\cos(\theta) + \frac{m_1}{m_2}}</math>
 
−
 
 
−
after a little trig substitution
 
−
 
 
−
<math>\Rightarrow \frac{m_1}{m_2} = \frac{sin(\theta - \psi)}{\sin(\psi)} =</math> constant
 
−
 
 
−
now use the chain rule to find <math>\frac{d \theta}{d \psi}</math>
 
−
 
 
−
: <math>f \equiv  \frac{sin(\theta - \psi)}{\sin(\psi)} =</math> constant
 
−
:<math>df = 0 = \frac{ \partial f}{\partial \psi} d \psi  + \frac{ \partial f}{\partial \theta} d \theta </math>
 
−
: <math>\Rightarrow \frac{d \theta}{d \psi} = \frac{-\frac{ \partial f}{\partial \psi} }{\frac{ \partial f}{\partial \theta} }</math>
 
−
 
 
−
:<math>-\frac{ \partial f}{\partial \psi} = \frac{\cos(\theta - \psi)}{\sin(\psi)} + \frac{\sin(\theta - \psi)}{\sin(\psi)}</math>
 
−
:<math>\frac{ \partial f}{\partial \theta }= 1 + \frac{\sin(\theta - \psi) \cos(\psi)}{\cos(\theta - \psi) \sin(\psi)}</math>
 
−
 
 
−
after substitution:
 
−
: <math>\sigma(\psi) = \frac{\sin(\theta)}{\sin(\psi)} \frac{d \theta}{d \psi} \sigma(\theta)</math>
 
−
: <math>=\frac{\sin(\theta)}{\sin(\psi)} \left [ 1 + \frac{\sin(\theta - \psi) \cos(\psi)}{\cos(\theta - \psi) \sin(\psi)} \right ] \sigma(\theta)</math>
 
−
 
 
−
For the above equation to be more useful one would prefer to recast it in terms of only <math>\psi</math> and masses.
 
−
 
 
−
:<math>\sigma(\psi) = \frac{\left [ \frac{m_1}{m_2}\cos(\psi) + \sqrt{1-\left ( \frac{m_1 \sin(\psi) }{m_2} \right )^2 }\right ]}{\sqrt{1 - \left ( \frac{m_1 \sin(\psi)}{m_2}\right )^2 }}</math>
 
−
 
 
−
== Stopping Power ==
 
−
Ann. Phys. vol. 5, 325, (1930)
 
−
=== Bethe Equation ===
 
−
====Classical Energy Loss ====
 
  
−
Consider the energy lost when a particle of charge (<math>ze</math>) traveling at speed <math>v</math> is scattered by a target of charge (<math>Ze</math>).  Assume only the coulomb force causes the particle to scatter from the target as shown below.
 
  
−
[[Image:SPIM_Bethe_ClassCoulScat.jpg]]
+
===4.10.02===
  
−
; Notice:
+
[[TF_GEANT4.10.2]]
−
: as <math>ze</math> is scattered the horizontal component of the coulomb force (<math>F</math>) flips direction; ie no horizontal force
+
===4.10.01===
  
−
:<math>F_{vertical} = k \frac{zZe^2}{r^2} \sin(\theta) = k \frac{zZe^2}{r^2}  \frac{b}{r}</math>
+
[[TF_GEANT4.10.1]]
  
−
where
+
==Building GEANT4.9.6==
−
: k =<math>\frac{1}{4 \pi \epsilon_0}</math>
 
−
: r = distance between incident projectile and target atom
 
−
: b= impact parameter of collision
 
  
 +
[[TF_GEANT4.9.6]]
  
−
Using the definition of Impulse one can determine the momentum change of <math>ze</math> as
+
==Building GEANT4.9.5==
  
−
: <math>\Delta p = \int F dt</math>
+
[[TF_GEANT4.9.5]]
  
−
Let's assume that the energy lost by the incident particle <math>ze</math> is absorbed by an electron in the target atom. This energy may be cast in terms of the incident particles momentum change as
+
An old version of Installation notes for versions prior to 9.5
  
−
:<math>\frac{(\Delta p)^2}{2m_e}</math>
+
[http://brems.iac.isu.edu/~tforest/NucSim/Day3/ Old Install Notes]
  
−
By calculating the change in momentum (<math>\Delta p</math>) of the incident particle we can infer the amount of energy lost by the incident particle and absorbed one of the target materials atomic electrons.
 
  
−
:<math>\Delta P = \int F dt = \int k \frac{zZe^2b}{r^3}  dt</math>
+
Visualization Libraries:
  
−
using  <math>dt = \frac{dx}{v} = \frac{d x}{\beta c}</math> we have
+
[http://www.opengl.org/ OpenGL]
  
−
: <math>= k \frac{zZe^2b}{\beta c} \int_{-\infty}^{+\infty} \frac{ dx}{(x^2+b^2)^{3/2}}</math>
+
[http://geant4.kek.jp/~tanaka/DAWN/About_DAWN.html  DAWN]
−
: <math>=\frac{kzZe^2b}{\beta c b^2} \int_{-\infty}^{+\infty} \frac{ dx/b}{(1+\frac{x}{b^2})^{3/2}}</math>
 
  
−
:<math>\int_{-\infty}^{+\infty} \frac{ dx/b}{(1+\frac{x}{b^2})^{3/2}}=2</math>
 
  
−
:<math> \Delta p = \frac{2kzZe^2b}{\beta c b^2}</math>
+
[http://doc.coin3d.org/Coin/  Coin3D]
  
−
casting this in terms of the classical atomic electron radius <math>r_e</math>
+
==Compiling G4 with ROOT==
  
−
: <math>r_e = \frac{k e^2}{m_e v^2} \sim \frac{k e^2}{m_e c^2}</math>  just equate <math>F = \frac{ke^2}{r_e^2} = m \frac{v^2}{r_e}</math>
+
These instruction describe how you can create a tree within ExN02SteppingVerbose to store tracking info in an array (max number of steps in a track is set to 100 for the desired particle)
  
−
Then
+
[[G4CompileWRootforTracks]]
  
−
:<math> \Delta p = \frac{2zZr_e m_e c}{\beta  b}</math>
+
==Using SLURM==
  
−
and
+
http://slurm.schedmd.com/quickstart.html
  
−
: <math>\Delta E = \frac{(\Delta p)^2}{2m_e} = 2 \left ( \frac{r_e m_e}{\beta b}\right )^2 \frac {z^2 Z^2 c^2}{m_e}</math> : <math>Z</math> = 1 here because I shall assume the energy is lost to just the electron and the Atom is a spectator
 
  
−
Now let's calculate an expression representing the average energy lost for an incident particle traversing a material of some thickness.
+
https://rc.fas.harvard.edu/resources/documentation/convenient-slurm-commands/
  
−
Let
+
===simple batch script for one process job===
  
−
: <math>P(\Delta E)</math> = Probability of an interaction taking place which results in an energy loss <math>\Delta E</math>
+
create the file submit.sbatch below
  
−
If we let
+
<pre>
 +
#!/bin/sh
 +
#SBATCH --time=1
 +
cd src/PI
 +
./PI_MC 100000000000000
 +
</pre>
  
−
Z  = Atomic Number = # electrons in target Atom = number of protons in an Atom
+
the execute
  
−
N = Avagadros number  = <math>6.022 \times 10^{23}  \frac{Atoms}{mol}</math>
+
:sbatch submit.sbatch
  
−
A = Atomic mass =  <math>\frac{g}{mole}</math>
+
check if its running with
  
−
<math>dP(\Delta E)</math>  = probability of hitting an atomic electron in the area of an annulus of radius (<math>b + db</math>) with an energy transfer between <math>\Delta E</math> and <math>\Delta E + d(\Delta E)</math>
+
:squeue
  
−
Then
+
to kill a batch job
  
−
: <math>\frac{-dE }{dx}= \int_0^{\infty} dP(\Delta E) \Delta E</math> = energy lost by the incident particle per distance traversed through the material
+
:scancel JOBID
  
−
I am just adding up all the energy losses weighted by the probability of the energy loss to find the total energy loss.
+
===On minerve===
  
−
:<math>dP(\Delta E) = \frac{N}{A} d \sigma =\frac{N}{A} (2 \pi b db) Z</math>  : classically <math>\sigma = \pi b^2 ; d \sigma = 2\pi b db
+
Sample script to submit 10 batch jobs.
−
</math>
 
  
−
<math>\Rightarrow \frac{-dE}{dx} = \int_0^{\infty} \frac{N}{A} (2 \pi b db) Z \Delta E = \frac{2 \pi N Z}{A} \int_0^{\infty} \Delta E b db</math>
+
the filename is minervesubmit and you run like
−
:= <math>\frac{2 \pi N Z}{A} \int_0^{\infty} \left [ \frac{2 r_e^2 m_e c^2 z^2}{\beta^2 b^2}\right ] b db</math>
+
  source minervesubmit
−
:= <math>4 \pi N r_e^2 m_e c^2 \frac{z^2 Z}{A \beta^2} \int_0^{\infty} \frac{db}{b}</math>
 
−
:=<math>\frac{\mathcal{K} }{A} \frac{z^2 Z}{\beta^2} \int_0^{\infty} \frac{db}{b}</math>
 
  
−
where
+
<pre>
−
<math>\frac{\mathcal{K}}{A} = \frac{4 \pi N r_e^2 m_e c^2}{A} = 0.307 \frac{MeV cm^2}{g}</math>''' if A=1'''
+
cd /home/foretony/src/GEANT4/geant4.9.5/Simulations/N02wROOT/batch
 +
qsub submit10mil
 +
qsub submit20mil
 +
qsub submit30mil
 +
qsub submit40mil
 +
qsub submit50mil
 +
qsub submit60mil
 +
qsub submit70mil
 +
qsub submit80mil
 +
qsub submit90mil
 +
qsub submit100mil
 +
</pre>
  
−
The limits of the above integral should be more physical in order to reflect the limits of the physics interaction. Let b_{min}  and b_{max} represent the minimum and maximum possible impact parameter where the physics is discribed,  as shown above,  by the coulomb force.
+
The file submit10mil looks like this
 +
<pre>
 +
#!/bin/sh
 +
#PBS -l nodes=1
 +
#PBS -A FIAC
 +
#PBS -M foretony@isu.edu
 +
#PBS -m abe
 +
#
 +
source /home/foretony/src/GEANT4/geant4.9.5/geant4.9.6-install/bin/geant4.sh
 +
cd /home/foretony/src/GEANT4/geant4.9.5/Simulations/N02wROOT/batch/10mil
 +
../../exampleN02 run1.mac > /dev/null
 +
</pre>
  
−
;What is <math>b_{min}</math>?
 
  
−
if <math>b \rightarrow 0</math> then <math>\frac{d E}{dx}</math> diverges and the energy transfer <math>\rightarrow \infty : \Delta E \sim \frac{1}{b}</math>.  Physically there is a maximum energy that may be transferred before the physics of the problem changes (ie: nuclear excitation, jet production, ...).  The de Borglie wavelength of the atom is used to estimate a value for <math>b_{min}</math> such that
+
use
  
−
: <math>b_{min} \sim \frac{1}{2} \lambda_{de Broglie} = \frac{h}{2p} = \frac{h}{2 \gamma m_e \beta c}</math>
+
  qstat
  
−
;What is b_{max}?
+
to check that the process is still running
  
−
As <math>b</math> gets bigger the interaction is "softer" and longer.  If the interaction time (<math>\tau_i</math>) is so long that it is equivalent to an electron orbit (<math>\tau_R</math>) then the atom looks more like it is neutrally charged.  You move from an interaction in which the electron orbit is perturbed adiabatically such that there is no orbit change and the minimum amount of energy is transferred to no interaction taking place because the atom is neutral.
+
use
  
−
Let
+
qdel jobID#
  
−
: <math>\tau_i = \frac{b_{max}}{v} (\sqrt{1-\beta^2})</math>  : fields at high velocities get Lorentz contracted
+
if you want to kill the batch job, the jobID number shows up when you do stat.
−
: <math>\tau_R \equiv \frac{h}{I}</math> : I <math>\equiv</math> mean excitation energy of target material ( <math>E = h \nu = h/ \tau</math>)
 
  
−
Condition for <math>b_{max}</math> :
+
for example
−
:<math>\tau_i = \tau_R</math>
+
<pre>
−
<math>\Rightarrow b_{max} = \frac{h \gamma \beta c}{I}</math>
+
[foretony@minerve HW10]$ qstat
 +
Job id                    Name            User            Time Use S Queue
 +
------------------------- ---------------- --------------- -------- - -----
 +
27033.minerve            submit          foretony        00:41:55 R default       
 +
[foretony@minerve HW10]$ qdel 27033
 +
[foretony@minerve HW10]$ qstat
 +
</pre>
  
−
<math>-\frac{dE}{dx} = \frac{\mathcal{K} }{A} \frac{z^2 Z}{\beta^2} \int_0^{\infty} \frac{db}{b}</math>
+
==Definitions of Materials==
−
: <math>= \frac{\mathcal{K} }{A} \frac{z^2 Z}{\beta^2} \ln \frac{b_{max}}{b_{min}}</math>
 
−
: <math>= \frac{\mathcal{K} }{A} \frac{z^2 Z}{\beta^2} \ln \frac{2 \gamma^2 m_e \beta^2 c^2}{I}</math>
 
  
−
=====Example 5: Find <math>\frac{dE}{dx}</math> for a 10 MeV proton hitting a liquid hydrogen (<math>LH_2</math>) target=====
+
[[File:MCNP_Compendium_of_Material_Composition.pdf]]
−
<math>\rho_{LH_2}</math> = 0.07 <math>\frac{g}{cm^3}</math><br>
 
−
A = Z=z=1<br>
 
−
<math>m_e c^2</math> = 0.511 MeV <br>
 
−
I = 21.6 eV : see solid data point From  Figure 27.5 on pg 6 of [http://pdg.lbl.gov/2007/reviews/passagerpp.pdf PDG] below.<br>
 
−
[[Image:PDG_IonizationPotential.jpg | 500 px]]
 
  
−
Just need to know <math>\gamma</math> and <math>\beta</math>
+
==Minerve2 GEANT 4.10.1 Xterm error==
  
−
"a 10 MeV proton" <math>\Rightarrow</math> Kinetic Energy (K.E.) = 10 MeV = <math>(\gamma - 1) mc^2</math>
 
  
−
:<math>\Rightarrow \gamma = \frac{K.E.}{mc^2} + 1 = \frac{10 MeV}{938 MeV} + 1 \sim 1 = \frac{1}{\sqrt{1-\beta^2}}</math>
+
On OS X El Capitan V 10.11.4 using XQuartz
  
−
Proton is not relativistic
+
~/src/GEANT4/geant4.10.1/Simulations/B2/B2a/exsmpleB2a
  
−
: <math>v^2 = \frac{2 K.E.}{m} = \frac{2 \cdot 10 MeV}{938 MeV/c^2} = 2 \times 10^{-2} c^2 \Rightarrow \beta^2 = \frac{v^2}{c^2} = 2\times 10^{-2}</math>
+
<pre>
  
−
Plugging in the numbers:
+
# Use this open statement to create an OpenGL view:
−
: <math>\frac{dE}{dx} = \left ( 0.307 \frac{MeV \cdot cm^2}{g}\right ) (1)^2 (1) \frac{1}{2 \times10^{-2}} \ln \left( \frac{2 (1) (0.511 MeV) (2 \times10^{-2})}{21.6 eV} \frac{10^6 eV}{MeV}\right)</math>
+
/vis/open OGL 600x600-0+0
−
: <math>= 105 \frac{MeV cm^3}{g}</math>
+
/vis/sceneHandler/create OGL
 +
/vis/viewer/create ! ! 600x600-0+0
 +
libGL error: failed to load driver: swrast
 +
X Error of failed request:  BadValue (integer parameter out of range for operation)
 +
  Major opcode of failed request:  150 (GLX)
 +
  Minor opcode of failed request:  3 (X_GLXCreateContext)
 +
  Value in failed request:  0x0
 +
  Serial number of failed request:  25
 +
  Current serial number in output stream: 26
 +
</pre>
  
−
====Bethe-Bloch Equation ====
 
  
−
=== Energy Straggling ===
 
−
==== Thick Absorber ====
 
−
====Thin Absorbers====
 
−
=== Range Straggling===
 
−
=== Electron Capture and Loss ===
 
−
=== Multiple Scattering ===
 
  
−
== Interactions of Electrons and Photons with Matter==
 
−
=== Bremsstrahlung===
 
−
=== Photo-electric effect===
 
−
=== Compton Scattering ===
 
−
=== Pair Production ===
 
  
−
== Hadronic Interactions ==
 
−
=== Neutron Interactions ===
 
−
==== Elastic scattering====
 
  
−
==== Inelasstic Scattering====
+
[[TF_SPIM_OLD]]

Latest revision as of 22:31, 15 January 2024

Class Admin

TF_SPIM_ClassAdmin

Homework Problems

HomeWork_Simulations_of_Particle_Interactions_with_Matter

Introduction

TF_SPIM_Intro

Energy Loss

TF_SPIM_StoppingPower

Ann. Phys. vol. 5, 325, (1930)

Interactions of Electrons and Photons with Matter

TF_SPIM_e-gamma

Hadronic Interactions

TF_SPIM_HadronicInteractions

Final Project

A final project will be submitted that will be graded with the following metrics:

1.) The document must be less than 15 pages.

2.) The document must contain references in a bibliography (5 points) .

3.) A comparison must be made between GEANT4's prediction and either the prediction of someone else or an experimental result(30 points).

4.) The graphs must be of publication quality with font sizes similar or larger than the 12 point font (10 points).

5.) The document must be grammatically correct (5 points).

6.) The document format must contain the following sections: An abstract of 5 sentences (5 points) , an Introduction(10 points), a Theory section (20 points) , if applicable a section describing the experiment that was simulated, a section delineating the comparisons that were made, and a conclusion( 15 points).

Resources

GEANT4 Home Page

ROOT Home page

Fermi Lab Example


NIST Range Tables

X-ray specturm

Installing_GEANT4.9.3_Fsim

Saving/restoring Random number seed

You save the current state of the random number generator with the command

/random/setSavingFlag 1

/run/beamOn 100

/random/saveThisRun

A file is created called

currentEvent.rndm

/control/shell mv currentEvent.rndm currentEvent10.rndm


You can restore the random number generator and begin generating random number from the last save time

/random/resetEngineFrom currentEvent.rndm

Building GEANT4.11

4.11.2

TF_GEANT4.11

Building GEANT4.10

4.10.02

TF_GEANT4.10.2

4.10.01

TF_GEANT4.10.1

Building GEANT4.9.6

TF_GEANT4.9.6

Building GEANT4.9.5

TF_GEANT4.9.5

An old version of Installation notes for versions prior to 9.5

Old Install Notes


Visualization Libraries:

OpenGL

DAWN


Coin3D

Compiling G4 with ROOT

These instruction describe how you can create a tree within ExN02SteppingVerbose to store tracking info in an array (max number of steps in a track is set to 100 for the desired particle)

G4CompileWRootforTracks

Using SLURM

http://slurm.schedmd.com/quickstart.html


https://rc.fas.harvard.edu/resources/documentation/convenient-slurm-commands/

simple batch script for one process job

create the file submit.sbatch below 

#!/bin/sh
#SBATCH --time=1
cd src/PI
./PI_MC 100000000000000

the execute

sbatch submit.sbatch

check if its running with

squeue

to kill a batch job

scancel JOBID

On minerve

Sample script to submit 10 batch jobs.

the filename is minervesubmit and you run like 

source minervesubmit

cd /home/foretony/src/GEANT4/geant4.9.5/Simulations/N02wROOT/batch
qsub submit10mil
qsub submit20mil
qsub submit30mil
qsub submit40mil
qsub submit50mil
qsub submit60mil
qsub submit70mil
qsub submit80mil
qsub submit90mil
qsub submit100mil

The file submit10mil looks like this 

#!/bin/sh
#PBS -l nodes=1
#PBS -A FIAC
#PBS -M foretony@isu.edu
#PBS -m abe
#
source /home/foretony/src/GEANT4/geant4.9.5/geant4.9.6-install/bin/geant4.sh
cd /home/foretony/src/GEANT4/geant4.9.5/Simulations/N02wROOT/batch/10mil
../../exampleN02 run1.mac > /dev/null


use 

qstat

to check that the process is still running

use 

qdel jobID#

if you want to kill the batch job, the jobID number shows up when you do stat.

for example 

[foretony@minerve HW10]$ qstat
Job id                    Name             User            Time Use S Queue
------------------------- ---------------- --------------- -------- - -----
27033.minerve             submit           foretony        00:41:55 R default        
[foretony@minerve HW10]$ qdel 27033
[foretony@minerve HW10]$ qstat

Definitions of Materials

File:MCNP Compendium of Material Composition.pdf

Minerve2 GEANT 4.10.1 Xterm error

On OS X El Capitan V 10.11.4 using XQuartz

~/src/GEANT4/geant4.10.1/Simulations/B2/B2a/exsmpleB2a 


# Use this open statement to create an OpenGL view:
/vis/open OGL 600x600-0+0
/vis/sceneHandler/create OGL
/vis/viewer/create ! ! 600x600-0+0
libGL error: failed to load driver: swrast
X Error of failed request:  BadValue (integer parameter out of range for operation)
  Major opcode of failed request:  150 (GLX)
  Minor opcode of failed request:  3 (X_GLXCreateContext)
  Value in failed request:  0x0
  Serial number of failed request:  25
  Current serial number in output stream:  26



TF_SPIM_OLD

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