Difference between revisions of "Run in GEMC"

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split -d -l 3000 -a 2 LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut.LUND LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut_
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split -d -l 3000 -a 3 LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut.LUND LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut_
 
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prename 's/(LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut_\d{2})/$1.LUND/' LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut_*
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prename 's/(LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut_\d{3})/$1.LUND/' LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut_*
 
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Revision as of 18:59, 14 August 2017

Since the LUND file is limited to 75000 particles (225000 lines), the gemc will have to be run in batch mode;

Creating a batch directory, with two subdirectories; 1)Phi_Parts, 2)submit.


1)Once the LUND file is broken into 178 parts, they can have the LUND extension added by: 

prename 's/(Phi_Parts_\d{4})/$1.LUND/' Phi_Parts_*

Placing each of these files into its own directory, within a directory named Phi_Parts 

find . -name "*.LUND" -exec sh -c 'mkdir "${1%.*}" ; mv "$1" "${1%.*}" ' _ {} \;


2)Creating the submit directory, and using a c++ program, creating the needed 178 

#include <iomanip>
#include <sstream>
#include <iostream>
#include <fstream>

using namespace std;

void submit() {

        for(int a=0;a<2;a++)
        {
                for(int b=0;b<10;b++)
                {
                        for(int c=0;c<10;c++)
                        {
                                string filename="submit0";
                                stringstream hundreds;
                                        hundreds << a;
                                stringstream tens;
                                        tens << b;
                                stringstream ones;
                                        ones << c;
                                string fullname="";
                                fullname=filename + hundreds.str() + tens.str() + ones.str();
                        //              cout << fullname << "\n";
                        
                                ofstream myfile;
                                myfile.open(fullname.c_str());
                                
                                
                                myfile << "#!/bin/sh\n";
                                myfile << "#PBS -l nodes=1\n";
                                myfile << "#PBS -A FIAC\n";   
                                myfile << "#PBS -M vanwdani@isu.edu\n";
                                myfile << "#PBS -m abe\n";
                                myfile << "#\n";
                                myfile << "cd /home/lds/src/CLAS/GEMC\n";
                                myfile << "tcsh\n";
                                myfile << "source setup\n";
                                myfile << "cd /home/lds/src/GEANT/geant4.9.6/geant4.9.6-install/bin/geant4.sh\n";
                                myfile << "cd /home/vanwdani/src/GEANT4/geant4.9.6/Simulations/Research/Moller/batch/Phi_Parts/Phi_Parts_0";
                                        myfile <<a<<b<<c<<"\n";
                                myfile << "gemc -USE_GUI=0 -Hall_Material=\"Vacuum\" -INPUT_GEN_FILE=\"LUND, Phi_Parts_0";
                                        myfile <<a<<b<<c;
                                        myfile << ".LUND\" -N=75000 eg12.gcard\n";
                                myfile << "~/src/CLAS/coatjava-1.0/bin/clas12-reconstruction -i eg12.ev -config DCHB::torus=1.0 ";
                                        myfile << "-config DCHB::solenoid=0.0 -config DCTB::kalman=true -o eg12_rec.ev  -s DCHB:DCTB:EC:FTOF:EB\n";
                                myfile << "~/src/CLAS/coatjava-1.0/bin/run-groovy Analysis.groovy eg12_rec.0.evio\n";
                                
                                
                                myfile.close();
                        }
                }
        }
         
}


This creates the submitXXXX file 

#!/bin/sh
#PBS -l nodes=1
#PBS -A FIAC
#PBS -M vanwdani@isu.edu
#PBS -m abe
#
cd /home/lds/src/CLAS/GEMC
tcsh
source setup
cd /home/lds/src/GEANT/geant4.9.6/geant4.9.6-install/bin/geant4.sh
cd /home/vanwdani/src/GEANT4/geant4.9.6/Simulations/Research/Moller/batch/Phi_Parts/Phi_Parts_0000
gemc -USE_GUI=0 -Hall_Material="Vacuum" -INPUT_GEN_FILE="LUND, Phi_Parts_0000.LUND" -N=75000 eg12.gcard
~/src/CLAS/coatjava-1.0/bin/clas12-reconstruction -i eg12.ev -config DCHB::torus=1.0 -config DCHB::solenoid=0.0 -config DCTB::kalman=true -o eg12_rec.ev  -s DCHB:DCTB:EC:FTOF:EB
~/src/CLAS/coatjava-1.0/bin/run-groovy Analysis.groovy eg12_rec.0.evio


Creating a file named lds-submit

Screen Shot 2016-03-15 at 2.36.26 PM.png


11GeV incident electron

Simulating with GEMC

For an incident electron at 11GeV, the Moller electron in the range of 5 to 40 degrees for the scattering angle Theta, has energies lower than 200MeV.

Mol E Theta Lab Spread.png
~/src/CLAS/GEMC/experiments/eg12/MolrBckGrd/DV/Isotropic_study/LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut> wc -l LUND_Spread_LH2_IsotropicPhi.LUND 
315000 LUND_Spread_LH2_IsotropicPhi.LUND


Spliting the LUND file into 105 parts of 1000 events, or 3000 lines 

split -d -l 3000 -a 3 LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut.LUND LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut_

Naming these files LUND files 

prename 's/(LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut_\d{3})/$1.LUND/' LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut_*

Placing each of these files into its own directory, within a directory named LH2_0Sol_0Tor_11GeV_IsotropicPhi_ShieldOut 

find . -name "*.LUND" -exec sh -c 'mkdir "${1%.*}" ; mv "$1" "${1%.*}" ' _ {} \;

Defining the gcards 

<gcard>

<!-- minumal detectors for HB tracking -->

        <detector name="../../../../../../clas12/fc/forwardCarriage" factory="TEXT" variation="original"/>
        <detector name="../../../../../../clas12/dc/dc"            factory="TEXT" variation="ccdb"/>
        <detector name="../../../../../../clas12/ftof/ftof"            factory="TEXT" variation="java"/>
        <option name="SCALE_FIELD" value="clas12-torus-big, -1"/>
        <option name="OUTPUT" value="evio, Molr.evio"/>




<!-- Solenoid apparatus and field -->


        <!--detector name="../../../../../../clas12/magnets/solenoid" factory="TEXT" variation="original"/-->
          <!--option name="HALL_FIELD"  value="clas12-solenoid"/-->

<!-- other CLAS detectors -->

       <detector name="../../../../../../clas12/ec/ec"            factory="TEXT" variation="original"/>
       <detector name="../../../../../../clas12/ctof/ctof"            factory="TEXT" variation="original"/>
       <detector name="../../../../../../clas12/htcc/htcc"            factory="TEXT" variation="original"/>
       <detector name="../../../../../../clas12/pcal/pcal"            factory="TEXT" variation="javageom"/>
       <!--detector name="../../../../../../clas12/micromegas/micromegas"  factory="TEXT" variation="original"/-->


<!-- Beamline material -->
         <!--detector name="../../../../../../clas12/beamline/beamline" factory="TEXT" variation="ft"/-->


</gcard>

Using a file to store the needed commands 

/src/CLAS/GEMC/source/gemc -USE_GUI=0 -INPUT_GEN_FILE="LUND,MolTest.LUND" -N=100 eg12.gcard


Solenoid off

~/src/CLAS/coatjava-2.4/bin/clas12-reconstruction -i ../files/MolrBckGrd/Molr.evio -config GEOM::new=true -config MAG::torus=1.0 -config MAG::solenoid=0.0 -o ../files/MolrBckGrd/Molr_rec.evio -s DCHB:DCTB:EC:FTOF:EB -config DATA::mc=true

Solenoid ON


~/src/CLAS/coatjava-2.4/bin/clas12-reconstruction -i ../files/MolrBckGrd/Molr.evio -config GEOM::new=true -config MAG::torus=-1.0 -config MAG::solenoid=1.0 -o ../files/MolrBckGrd/Molr_rec.evio -s DCHB:DCTB:EC:FTOF:EB -config DATA::mc=true -config DCTB::useRaster=true


~/src/CLAS/coatjava-2.4/bin/evio-dump -i ../files/MolrBckGrd/Molr_rec.0.evio

Analyzing Results

Using cat to combine the reconstructed particles found using Analysis.groovy, we can output the particle number from the LUND file, Total Energy, scattering angles Theta, and Phi for the generated and reconstructed particles respectively.

For 0T: 

571-1    0.12103204139108564  5.232292493596922       9.99999999997547 0.2397734  64.37257     163.2439
23025-3    0.02376743729734356  11.825408412314742       9.999999999978474 0.29301766  89.180336     -164.40204

For 5T: 

24726-1    0.08576327895104396  6.223977074710134       9.99999999997547 0.17311224  20.298353     39.036583
19970-3    0.026540097007028158  11.193535798440614       9.999999999969427 0.15106007  49.16122     14.2969885


Converting the particle number per run into the particle number via the LUND file: Multiplying the line number by 3 accounts for the 3 lines per particle in the LUND file. From this LUND particle we find the weight associated with each particle (Specific Energy and angle Theta). To find the number of particles we can use an awk command: 

awk 'NR == 1711 { print $6 }' LUND_Spread.LUND


Moller Electron Weights for 11GeV Incident Electron
Particle number Run number LUND Moller electron number Overall LUND particle number Corrected LUND header line number Number of Particles
571 1 571 1713 1711 1097.227223687062
23025 3 69075 207225 207223 25951.273801947842
24726 1 24726 74178 74176 2579.181846387747
19970 3 59910 179730 179728 14255.222465310777

Cross Section

Using the number of expected Moller electrons and the fact that the reaction cross section can be found using the Luminosity we find: Integrating the differential cross-section over the solid angle:

DetectorIntegrationXSect LH2 11GeV.png
IntegralDiffXSect->Integral()

4.97493824519086629e+04 barns


Multiplying by the Luminosity, we find:

[math]4.97\times 10^{4} barns \times\frac{1.35\times 10^{11}}{barns\cdot s}=6.71\times 10^{15}\frac{electrons}{s}[/math]
[math]\Rightarrow \sigma=\int\limits_{\theta=0}^{\pi} \int\limits_{\phi=0}^{2\pi} \left(\frac{d\sigma}{d\Omega}\right)\ \sin{\theta}\,d\theta\,d\phi =\frac{N}{\mathcal L}\equiv total\ scattering\ cross\ section[/math]


Since this is just a ratio of detected particles to total particles, this gives the cross section as a relative probablity of a scattering, or reaction, to occur.

For 0T with 11GeV incident electrons:

[math]\Rightarrow \sigma=\frac{27048}{2.48\times 10^{23}}=1.09\times 10^{-19} barns[/math]

For 5T with 11GeV incident electrons:

[math]\Rightarrow \sigma=\frac{16834}{2.48\times 10^{23}}=6.79\times 10^{-20} barns[/math]

5.5GeV incident electron

Mol E Theta Lab Spread half.png

For 0T: 

16544-1    0.10778422619732184  5.519947956962607       9.999999999974188 0.19995739  25.982777     96.17941


For 5T: 

354-1    0.09640233076149667  5.8423283009263045       9.999999999976643 0.09051078  49.163692     -85.56053
5526-4    0.03948624565299794  9.164813676343726       9.999999999971514 0.12387912  52.14526     50.051956
21892-4    0.02741437437384611  11.000629446532491       9.99999999997668 0.26457193  81.77688     179.14293
Moller Electron Weights for 5.5GeV Incident Electron
Particle number Run number LUND Moller electron number Overall LUND particle number Corrected LUND header line number Number of Particles
16544 1 16544 49632 49630 814.898350440404
354 1 354 1062 1060 556.656736645754
5526 4 22104 66312 66310 937.328333457728
21892 4 87568 262704 262702 8343.893471134810
Full90 halfE MolThetaLab.png
MolThetaLabweighted->Integral()

This gives about 4.96e+23 incident electrons

For 0T with 5.5GeV incident electrons:

[math]\Rightarrow \sigma=\frac{814}{4.96\times 10^{23}}=1.64\times 10^{-21} barns[/math]

For 5T with 5.5GeV incident electrons:

[math]\Rightarrow \sigma=\frac{9838}{4.96\times 10^{23}}=1.98\times 10^{-20} barns[/math]
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