Difference between revisions of "Installing A Cluster"

Latest revision as of 21:09, 6 August 2012

Network configuration

Head nodes works as NAT router for slave nodes

eth0 connects to outside world eth1 is internal

Internal network is 10.200.0.0/255.255.0.0

OS installation

Normal server Linux install with the following packages:

openssh-server
tftpd-hpa
dhcp3-server
nfs-kernel-server
debootstrap
libpmi
mpich2
slurm-llnl
slurm-llnl-slurmdbd
syslinux

Setting up a chroot for the node root

Boot to a live CD and mount the root drive as /new
Copy the root fs to a chroot rsync -av /new/ /new/nodes/precise/ --exclude /nodes
Enter the chroot chroot /nodes/precise/
Change the following lines in /etc/initramfs-tools/initramfs.conf

 MODULES=netboot
 BOOT=nfs

The DEVICE= and NFSROOT= lines may also be of use if the tftpboot configuration isn't working

Update the initramfs update-initramfs -c -k all

NFS

On the head node, add the following to /etc/exports

/nodes/lucid    10.200.0.0/24(ro,async,no_root_squash,no_subtree_check)
/home           10.200.0.0/24(rw,async,root_squash,no_subtree_check)

see man 5 exports for more information. There are also more nfs settings in

/etc/default/nfs-common 
/etc/default/nfs-kernel-server

Reload the NFS server settings

/etc/init.d/nfs-kernel-server force-reload

Netbooting

Setting up dhcp

Edit /etc/dhcp3/dhcpd.conf as follows:

 ddns-update-style none;
 option domain-name "iac.isu.edu";
 option domain-name-servers 134.50.254.5, 134.50.57.57;
 authoritative;

 default-lease-time 600;
 max-lease-time 1200;

 subnet 10.0.200.0 netmask 255.255.255.0  
 {
  range 10.0.34.1 10.0.34.200; #we really don't even need a range
  option routers 10.0.200.1;
  #address of the TFTP server, optional if the same as the dhcp server
  next-server 10.0.200.1;
  filename "pxelinux.0";
 }
 #eth0 on brems2
 host brems2_0
 {
  hardware ethernet 00:50:45:5C:10:54;
  fixed-address 10.0.200.2;
  option host-name "brems2";
 }

Edit /etc/default/dhcp3-server

INTERFACES=eth1

This will avoid dhcp serving on the outside network!

service dhcp3-server restart

Setting up tftp

Edit /etc/default/tftpd-hpa

TFTP_USERNAME="tftp"
TFTP_DIRECTORY="/var/lib/tftpboot"
#Keep TFTP on the inside network
TFTP_ADDRESS="10.0.200.1:69"
TFTP_OPTIONS="--secure"

Set up the filesystem to boot using pxe and tftpd:

mkdir -p /var/lib/tftpboot/pxelinux.cfg
cp /usr/lib/syslinux/pxelinux.0 /var/lib/tftpboot/

Make a file similiar to the following as /var/lib/tftpboot/boot.msg

Booting Brems!!

Put the following in /var/lib/tftpboot/pxelinux.cfg/default. The files are referenced relative to /var/lib/tftpboot/

TIMEOUT 5
DISPLAY boot.msg
DEFAULT vmlinuz
APPEND root=/dev/nfs initrd=initrd.img netboot=nfs nfsroot=10.0.200.1:/nodes/precise,nolock,ro nomodeset

Set up a kernel and initrd in tftpboot

cp /nodes/precise/boot/vmlinuz-3.2.0-24-generic /var/lib/tftpboot/vmlinuz
chmod a+r /var/lib/tftpboot/vmlinuz
cp /nodes/precise/boot/initrd.img-3.2.0-24-generic /var/lib/tftpboot/initrd.img

Setting up pxelinux

Testing

Scheduler installation

The Quick Start Administrator Guide is very helpful.

Install

slurm-llnl
slurm-llnl-slurmdbd
slurm-llnl-doc
- mkdir /var/run/slurm-llnl

Munge

Munge is an authentication framework recommended by slurm. All the configuration it needs is:

root@brems:# /usr/sbin/create-munge-key
Generating a pseudo-random key using /dev/urandom completed.
root@brems:# /etc/init.d/munge start

Adding a node to the cluster

Set node to PXE boot
Add a new entry to /etc/dhcp3/dhcpd.conf
Reload dhcpd
Add new host to /etc/hosts file
Copy /etc/hosts to /nodes/lucid/etc/hosts
Create a new var cp -r /nodes/lucidvar/template /nodes/lucidvar/newhost
Boot the node
Add the ssh key to system-wide known-hosts ssh-keyscan newhost >> /etc/ssh/ssh_known_hosts
Add the host to cluster ssh
Add the node to slurm config

Customising initrd

Sometimes a customised initrd is necessary.

Extracting

Create a directory to extract into:

mkdir init_test; cd init_test

Extract an existing initrd

gzip -d < /var/lib/tftpboot/initrd.img | cpio -iv

Edit the file tree as needed. You can add files (modules for instance), or editing boot script (/init is run by default).

Then package up the directory into a new initrd:

find ./ | cpio -ov -H newc | gzip > ../initrd.new

@@ Line 1: / Line 1: @@
 ==Network configuration==
-Head nodes works as NAT for slave nodes
+Head nodes works as NAT router for slave nodes
 eth0 connects to outside world
 eth1 is internal
-Internal network is 10.0.200.0/255.0.0.0
+Internal network is 10.200.0.0/255.255.0.0
 ==OS installation==
 Normal server Linux install with the following packages:
-* ssh server
+* openssh-server
 * tftpd-hpa
 * dhcp3-server
 * nfs-kernel-server
 * debootstrap
 * libpmi
 * mpich2
 * slurm-llnl
+* slurm-llnl-slurmdbd
-Grab pxelinux from the web
+* syslinux
 ===Setting up a chroot for the node root===
-The chroot is a directory on the head nodes that hosts the root filesystem that the slave nodes will use.
+* Boot to a live CD and mount the root drive as /new
-A chroot file system is installed with '''debootstrap''' and can be chrooted into so it acts like a standard install.
+* Copy the root fs to a chroot '''rsync -av /new/ /new/nodes/precise/ --exclude /nodes'''
- mkdir -p /nodes/lucid
+* Enter the chroot '''chroot /nodes/precise/'''
- debootstrap lucid /nodes/lucid/ http://backup.iac.isu.edu:9999/ubuntu/
+* Change the following lines in ''/etc/initramfs-tools/initramfs.conf''
- cp /etc/apt/sources.list /nodes/lucid/etc/apt/
+<pre>
- cp /etc/resolv.conf /nodes/lucid/resolv.conf
+  MODULES=netboot
- chroot /nodes/lucid/
+  BOOT=nfs
-  apt-get update
+</pre>
-  locale-gen en_US.UTF-8
+The DEVICE= and NFSROOT= lines may also be of use if the tftpboot configuration isn't working
- dpkg-reconfigure tzdata
+* Update the initramfs '''update-initramfs -c -k all'''
-More information about [https://wiki.ubuntu.com/DebootstrapChroot chroots], especially helpful locale setup.
-In the chroot we want to install the following packages:
-* slurm-llnl
-* munge
-* nfs-common
-* openssh-client
-* openssh-server
 ===NFS===
 On the head node, add the following to /etc/exports
-  /nodes/lucid    10.0.200.0/24(ro,async,no_root_squash,no_subtree_check)
+  /nodes/lucid    10.200.0.0/24(ro,async,no_root_squash,no_subtree_check)
-  /home           10.0.200.0/24(rw,async,root_squash,no_subtree_check)
+  /home           10.200.0.0/24(rw,async,root_squash,no_subtree_check)
 see '''man 5 exports''' for more information. There are also more nfs settings in
   /etc/default/nfs-common
   /etc/default/nfs-kernel-server
+Reload the NFS server settings
+ /etc/init.d/nfs-kernel-server force-reload
 ===Netbooting===
@@ Line 56: / Line 49: @@
 ====Setting up dhcp====
 Edit /etc/dhcp3/dhcpd.conf as follows:
-  dhcpd.conf - note comma between dns servers
+<pre>
+  ddns-update-style none;
+ option domain-name "iac.isu.edu";
+ option domain-name-servers 134.50.254.5, 134.50.57.57;
+ authoritative;
+ default-lease-time 600;
+ max-lease-time 1200;
+ subnet 10.0.200.0 netmask 255.255.255.0
+ {
+  range 10.0.34.1 10.0.34.200; #we really don't even need a range
+  option routers 10.0.200.1;
+  #address of the TFTP server, optional if the same as the dhcp server
+  next-server 10.0.200.1;
+  filename "pxelinux.0";
+ }
+ #eth0 on brems2
+ host brems2_0
+ {
+  hardware ethernet 00:50:45:5C:10:54;
+  fixed-address 10.0.200.2;
+  option host-name "brems2";
+ }
+</pre>
 Edit /etc/default/dhcp3-server
   INTERFACES=eth1
 This will avoid dhcp serving on the outside network!
-  service dhcp3-server start
+  service dhcp3-server restart
 ====Setting up tftp====
 Edit /etc/default/tftpd-hpa
-  RUN_DAEMON="yes" #had problems with inetd in the past
+  TFTP_USERNAME="tftp"
-  OPTIONS="-l -a 10.0.200.1 -s /var/lib/tftpboot"
+ TFTP_DIRECTORY="/var/lib/tftpboot"
+ #Keep TFTP on the inside network
+  TFTP_ADDRESS="10.0.200.1:69"
+ TFTP_OPTIONS="--secure"
+Set up the filesystem to boot using pxe and tftpd:
+ mkdir -p /var/lib/tftpboot/pxelinux.cfg
+ cp /usr/lib/syslinux/pxelinux.0 /var/lib/tftpboot/
+Make a file similiar to the following as /var/lib/tftpboot/boot.msg
+ Booting Brems!!
+Put the following in '''/var/lib/tftpboot/pxelinux.cfg/default'''.
+The files are referenced relative to /var/lib/tftpboot/
+ TIMEOUT 5
+ DISPLAY boot.msg
+ DEFAULT vmlinuz
+ APPEND root=/dev/nfs initrd=initrd.img netboot=nfs nfsroot=10.0.200.1:/nodes/precise,nolock,ro nomodeset
-====Setting up nfs====
+Set up a kernel and initrd in tftpboot
+ cp /nodes/precise/boot/vmlinuz-3.2.0-24-generic /var/lib/tftpboot/vmlinuz
+ chmod a+r /var/lib/tftpboot/vmlinuz
+ cp /nodes/precise/boot/initrd.img-3.2.0-24-generic /var/lib/tftpboot/initrd.img
+====Setting up pxelinux====
 ====Testing====
@@ Line 88: / Line 127: @@
   Generating a pseudo-random key using /dev/urandom completed.
   root@brems:# /etc/init.d/munge start
+==Adding a node to the cluster==
+#Set node to PXE boot
+#Add a new entry to /etc/dhcp3/dhcpd.conf
+#Reload dhcpd
+#Add new host to /etc/hosts file
+#Copy /etc/hosts to /nodes/lucid/etc/hosts
+#Create a new var '''cp -r /nodes/lucidvar/template /nodes/lucidvar/newhost'''
+#Boot the node
+#Add the ssh key to system-wide known-hosts '''ssh-keyscan newhost >> /etc/ssh/ssh_known_hosts'''
+#Add the host to cluster ssh
+#Add the node to slurm config
+==Customising initrd==
+Sometimes a customised initrd is necessary.
+====Extracting====
+Create a directory to extract into:
+ mkdir init_test; cd init_test
+Extract an existing initrd
+ gzip -d < /var/lib/tftpboot/initrd.img | cpio -iv
+Edit the file tree as needed. You can add files (modules for instance),
+or editing boot script (/init is run by default).
+Then package up the directory into a new initrd:
+ find ./ | cpio -ov -H newc | gzip > ../initrd.new