Running Expanded LUND files in GEMC - Revision history

Vanwdani at 16:28, 6 June 2016

2016-06-06T16:28:37Z

Vanwdani at 15:29, 31 March 2016

2016-03-31T15:29:26Z

Vanwdani: Created page with "Since the LUND file is limited to 75000 lines, the gemc will have to be run in batch mode; Creating a batch directory, with two subdirectories; 1)Phi_Parts, 2)submit. '''1)'''…"

2016-03-30T01:15:23Z

Created page with "Since the LUND file is limited to 75000 lines, the gemc will have to be run in batch mode; Creating a batch directory, with two subdirectories; 1)Phi_Parts, 2)submit. '''1)'''…"

New page

Since the LUND file is limited to 75000 lines, the gemc will have to be run in batch mode;

Creating a batch directory, with two subdirectories; 1)Phi_Parts, 2)submit.

'''1)'''Once the LUND file is broken into 178 parts, they can have the LUND extension added by:

<pre>prename 's/(Phi_Parts_\d{4})/$1.LUND/' Phi_Parts_*</pre>

Placing each of these files into its own directory, within a directory named Phi_Parts

<pre>find . -name "*.LUND" -exec sh -c 'mkdir "${1%.*}" ; mv "$1" "${1%.*}" ' _ {} \;</pre>

'''2)'''Creating the submit directory, and using a c++ program, creating the needed 178

<pre>#include <iomanip>
#include <sstream>
#include <iostream>
#include <fstream>

using namespace std;

void submit() {

for(int a=0;a<2;a++)
{
for(int b=0;b<10;b++)
{
for(int c=0;c<10;c++)
{
string filename="submit0";
stringstream hundreds;
hundreds << a;
stringstream tens;
tens << b;
stringstream ones;
ones << c;
string fullname="";
fullname=filename + hundreds.str() + tens.str() + ones.str();
// cout << fullname << "\n";

ofstream myfile;
myfile.open(fullname.c_str());

myfile << "#!/bin/sh\n";
myfile << "#PBS -l nodes=1\n";
myfile << "#PBS -A FIAC\n";
myfile << "#PBS -M vanwdani@isu.edu\n";
myfile << "#PBS -m abe\n";
myfile << "#\n";
myfile << "cd /home/lds/src/CLAS/GEMC\n";
myfile << "tcsh\n";
myfile << "source setup\n";
myfile << "cd /home/lds/src/GEANT/geant4.9.6/geant4.9.6-install/bin/geant4.sh\n";
myfile << "cd /home/vanwdani/src/GEANT4/geant4.9.6/Simulations/Research/Moller/batch/Phi_Parts/Phi_Parts_0";
myfile <<a<<b<<c<<"\n";
myfile << "gemc -USE_GUI=0 -Hall_Material=\"Vacuum\" -INPUT_GEN_FILE=\"LUND, Phi_Parts_0";
myfile <<a<<b<<c;
myfile << ".LUND\" -N=75000 eg12.gcard\n";
myfile << "~/src/CLAS/coatjava-1.0/bin/clas12-reconstruction -i eg12.ev -config DCHB::torus=1.0 ";
myfile << "-config DCHB::solenoid=0.0 -config DCTB::kalman=true -o eg12_rec.ev -s DCHB:DCTB:EC:FTOF:EB\n";
myfile << "~/src/CLAS/coatjava-1.0/bin/rungroovy Analysis.groovy eg12_rec.0.evio\n";

myfile.close();
}
}
}

}</pre>

This creates the submitXXXX file

<pre>#!/bin/sh
#PBS -l nodes=1
#PBS -A FIAC
#PBS -M vanwdani@isu.edu
#PBS -m abe
#
cd /home/lds/src/CLAS/GEMC
tcsh
source setup
cd /home/lds/src/GEANT/geant4.9.6/geant4.9.6-install/bin/geant4.sh
cd /home/vanwdani/src/GEANT4/geant4.9.6/Simulations/Research/Moller/batch/Phi_Parts/Phi_Parts_0000
gemc -USE_GUI=0 -Hall_Material="Vacuum" -INPUT_GEN_FILE="LUND, Phi_Parts_0000.LUND" -N=75000 eg12.gcard
~/src/CLAS/coatjava-1.0/bin/clas12-reconstruction -i eg12.ev -config DCHB::torus=1.0 -config DCHB::solenoid=0.0 -config DCTB::kalman=true -o eg12_rec.ev -s DCHB:DCTB:EC:FTOF:EB
~/src/CLAS/coatjava-1.0/bin/rungroovy Analysis.groovy eg12_rec.0.evio

</pre>

Creating a file named lds-submit

[[File:Screen_Shot_2016-03-15_at_2.36.26_PM.png]]

----

=Links=

[[DV_RunGroupC_Moller#Running_Expanded_LUND_files_in_GEMC|Back]]

@@ Line 1: / Line 1: @@
-Since the LUND file is limited to 75000 lines, the gemc will have to be run in batch mode;
+Since the LUND file is limited to 75000 particles (225000 lines), the gemc will have to be run in batch mode;
 Creating a batch directory, with two subdirectories; 1)Phi_Parts, 2)submit.
@@ Line 88: / Line 88: @@
 gemc -USE_GUI=0 -Hall_Material="Vacuum" -INPUT_GEN_FILE="LUND, Phi_Parts_0000.LUND" -N=75000 eg12.gcard
 ~/src/CLAS/coatjava-1.0/bin/clas12-reconstruction -i eg12.ev -config DCHB::torus=1.0 -config DCHB::solenoid=0.0 -config DCTB::kalman=true -o eg12_rec.ev  -s DCHB:DCTB:EC:FTOF:EB
-~/src/CLAS/coatjava-1.0/bin/rungroovy Analysis.groovy eg12_rec.0.evio
+~/src/CLAS/coatjava-1.0/bin/run-groovy Analysis.groovy eg12_rec.0.evio
 </pre>

@@ Line 62: / Line 62: @@
                                  myfile << "~/src/CLAS/coatjava-1.0/bin/clas12-reconstruction -i eg12.ev -config DCHB::torus=1.0 ";
                                          myfile << "-config DCHB::solenoid=0.0 -config DCTB::kalman=true -o eg12_rec.ev  -s DCHB:DCTB:EC:FTOF:EB\n";
-                                 myfile << "~/src/CLAS/coatjava-1.0/bin/rungroovy Analysis.groovy eg12_rec.0.evio\n";
+                                 myfile << "~/src/CLAS/coatjava-1.0/bin/run-groovy Analysis.groovy eg12_rec.0.evio\n";